FastQCFastQC Report
Fri 26 Aug 2022
EGAF00005472684

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005472684
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences177966182
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTGTGGC5944743833.40378342217849No Hit
GGGTCAAG4228233723.758635783960347No Hit
TACCACCA4003287422.49465238288924No Hit
CTAAGTTT3620353320.342928410971922No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)