FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005474250

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005474250
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24843679
Sequences flagged as poor quality0
Sequence length76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGATTAC179750.024.7658813
GGGATTA193250.024.68389312
GATTACA191200.023.1545114
ATTACAG210150.021.10014315
TGGGATT263200.019.98540711
TTACAGG226050.019.07472816
TACAGGC202050.017.9798617
AAAGTGC199500.017.1722874
CCAAAGT229850.016.435042
ACAGGCG140600.015.48288918
CTGGGAT344450.015.31188910
CAAAGTG245750.015.0516713
AAGTGCT236600.014.953215
GGCGTGA126250.014.58281921
GCGTGAG129250.014.56957122
CGTGAGC132200.014.32394323
AATCGCT30750.014.00075726
CCCAAAG323650.013.6699371
CGAGTAG42900.013.6226743
AGGCGTG141350.013.54501620
Produced by FastQC (version 0.11.5)