FastQCFastQC Report
Sun 19 May 2024
EGAF00005475280

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005475280
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences301863162
Total Bases15 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA21376560.7081539813725266No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3307350.10956454501062968No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)