FastQCFastQC Report
Sun 19 May 2024
EGAF00005475282

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005475282
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences307494681
Total Bases15.3 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20653090.6716568212768532No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3196210.10394358658841323No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)