FastQCFastQC Report
Sun 19 May 2024
EGAF00005475289

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005475289
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences340088759
Total Bases22.1 Gbp
Sequences flagged as poor quality0
Sequence length65
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAGTTCGAACTGGCCTGCGACCGACAAGAGGTAGCGGTGACAGTCTTGG5314740.156275085822522No Hit
ATCTCCACAACTGGCCTGCGATGACAGACAGGTAGCGGTGACAACTCATA4915620.14453932598225042No Hit
ATCCCGGAGACTGGCCTGCGAAGGCAGCTAGGTAGCGGTGACAACTAGAC4260640.12528023603391136No Hit
CGTTACTAAACTGGCCTGCGAGCCAATGTAGGTAGCGGTGACACTACATG3551380.10442509215660375No Hit
CACACACTAACTGGCCTGCGACTTGCTTCAGGTAGCGGTGACAATGGGAC3491420.1026620230044122No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)