FastQCFastQC Report
Sun 19 May 2024
EGAF00005475291

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005475291
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences331979089
Total Bases21.5 Gbp
Sequences flagged as poor quality0
Sequence length65
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTCCAGGACTGGCCTGCGAGACCTTAGAGGTAGCGGTGACATGTCTAT5077150.1529358374737874No Hit
TGGCTCAGAACTGGCCTGCGACAGTGCCCGGGTAGCGGTGACACAAGTAG3876070.11675645028352975No Hit
ACACGCCGGACTGGCCTGCGAATCCTAGGAGGTAGCGGTGACATCTCACG3744470.11279234518292204No Hit
CAGCTGACAACTGGCCTGCGAGACCTTAGAGGTAGCGGTGACAACATTCG3542920.10672117965839711No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)