FastQCFastQC Report
Sun 19 May 2024
EGAF00005475293

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005475293
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences333355037
Total Bases21.6 Gbp
Sequences flagged as poor quality0
Sequence length65
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAGTTCGAACTGGCCTGCGACCGACAAGAGGTAGCGGTGACAGTCTTGG5199540.15597604424378322No Hit
ATCTCCACAACTGGCCTGCGATGACAGACAGGTAGCGGTGACAACTCATA4827800.1448245703274014No Hit
ATCCCGGAGACTGGCCTGCGAAGGCAGCTAGGTAGCGGTGACAACTAGAC4194080.12581420811109567No Hit
CGTTACTAAACTGGCCTGCGAGCCAATGTAGGTAGCGGTGACACTACATG3474540.10422941351865637No Hit
CACACACTAACTGGCCTGCGACTTGCTTCAGGTAGCGGTGACAATGGGAC3422320.10266291551490792No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)