FastQCFastQC Report
Mon 20 May 2024
EGAF00005475295

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005475295
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences335193909
Total Bases21.7 Gbp
Sequences flagged as poor quality0
Sequence length65
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAGTTCGAACTGGCCTGCGACCGACAAGAGGTAGCGGTGACAGTCTTGG5175280.1543966003272452No Hit
ATCTCCACAACTGGCCTGCGATGACAGACAGGTAGCGGTGACAACTCATA4790600.14292025813631357No Hit
ATCCCGGAGACTGGCCTGCGAAGGCAGCTAGGTAGCGGTGACAACTAGAC4155470.12397212146238612No Hit
CGTTACTAAACTGGCCTGCGAGCCAATGTAGGTAGCGGTGACACTACATG3451200.10296129814220462No Hit
CACACACTAACTGGCCTGCGACTTGCTTCAGGTAGCGGTGACAATGGGAC3392880.10122140972436346No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)