FastQCFastQC Report
Sun 19 May 2024
EGAF00005475297

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005475297
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences331196376
Total Bases21.5 Gbp
Sequences flagged as poor quality0
Sequence length65
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAGTTCGAACTGGCCTGCGACCGACAAGAGGTAGCGGTGACAGTCTTGG5020740.1515940500508375No Hit
ATCTCCACAACTGGCCTGCGATGACAGACAGGTAGCGGTGACAACTCATA4662610.14078082786751267No Hit
ATCCCGGAGACTGGCCTGCGAAGGCAGCTAGGTAGCGGTGACAACTAGAC4056220.12247175071746558No Hit
CGTTACTAAACTGGCCTGCGAGCCAATGTAGGTAGCGGTGACACTACATG3360030.10145129124238968No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)