FastQCFastQC Report
Sun 19 May 2024
EGAF00005475299

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005475299
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences330227709
Total Bases21.4 Gbp
Sequences flagged as poor quality0
Sequence length65
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTCCAGGACTGGCCTGCGAGACCTTAGAGGTAGCGGTGACATGTCTAT5010050.1517150094754768No Hit
TGGCTCAGAACTGGCCTGCGACAGTGCCCGGGTAGCGGTGACACAAGTAG3803150.11516750098036141No Hit
ACACGCCGGACTGGCCTGCGAATCCTAGGAGGTAGCGGTGACATCTCACG3676450.11133075450067698No Hit
CAGCTGACAACTGGCCTGCGAGACCTTAGAGGTAGCGGTGACAACATTCG3478290.10533004666788878No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)