FastQCFastQC Report
Sun 19 May 2024
EGAF00005475301

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005475301
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences328510270
Total Bases21.3 Gbp
Sequences flagged as poor quality0
Sequence length65
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTCCAGGACTGGCCTGCGAGACCTTAGAGGTAGCGGTGACATGTCTAT5057820.153962309914999No Hit
TGGCTCAGAACTGGCCTGCGACAGTGCCCGGGTAGCGGTGACACAAGTAG3858880.11746603842857027No Hit
ACACGCCGGACTGGCCTGCGAATCCTAGGAGGTAGCGGTGACATCTCACG3741220.11388441524217796No Hit
CAGCTGACAACTGGCCTGCGAGACCTTAGAGGTAGCGGTGACAACATTCG3532180.10752114385952075No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)