FastQCFastQC Report
Thu 16 May 2024
EGAF00005475327

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005475327
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90858227
Total Bases5.9 Gbp
Sequences flagged as poor quality0
Sequence length65
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATCGAATGACTGGCCTGCGAAGGGCTGGTGGTAGCGGTGACAACAAGTG3788720.4169925085595166No Hit
TTGTTCCAAACTGGCCTGCGAAGATAGTTCGGTAGCGGTGACACATAACG2470680.27192694394091577No Hit
AACTGTATTACTGGCCTGCGAGACACTTAAGGTAGCGGTGACAACAGTAA2015240.22180049804405716No Hit
AACTGTATTACTGGCCTGCGAACTTGATGAGGTAGCGGTGACATCTCACG1712300.1884584430642698No Hit
TAGCTTGTAACTGGCCTGCGAGGAGTCTAAGGTAGCGGTGACACTAGATA1434590.1578932417424346No Hit
GCAATCCGAACTGGCCTGCGATAGTGACTAGGTAGCGGTGACAAAGGGAA1432460.15765881057749453No Hit
CAGAATCGTACTGGCCTGCGAAGTGAAAGGGGTAGCGGTGACAAACGTGT1302590.14336511321093687No Hit
AACCGCCTCACTGGCCTGCGACACCAGGTAGGTAGCGGTGACAATATTGT1221440.13443361601145926No Hit
TCTCTTCAAACTGGCCTGCGAATTACCAAGGGTAGCGGTGACAAGTAATT1172700.1290692146127835No Hit
ATGGATCCAACTGGCCTGCGAAAGCTACTTGGTAGCGGTGACAAACATCC1046640.11519485186520313No Hit
CTTCACATAACTGGCCTGCGAATCCAACCGGGTAGCGGTGACAGATCAGC982120.10809367873753468No Hit
ATTGGCTAAACTGGCCTGCGATTGGTATGAGGTAGCGGTGACAACTTACG914650.10066782394950322No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)