FastQCFastQC Report
Wed 15 May 2024
EGAF00005475339

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005475339
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90824894
Total Bases5.9 Gbp
Sequences flagged as poor quality0
Sequence length65
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATCGAATGACTGGCCTGCGAAGGGCTGGTGGTAGCGGTGACAACAAGTG3672290.4043263733398907No Hit
TTGTTCCAAACTGGCCTGCGAAGATAGTTCGGTAGCGGTGACACATAACG2360750.2599232320601442No Hit
AACTGTATTACTGGCCTGCGAGACACTTAAGGTAGCGGTGACAACAGTAA1942430.2138653748387529No Hit
AACTGTATTACTGGCCTGCGAACTTGATGAGGTAGCGGTGACATCTCACG1658950.18265366761672192No Hit
TAGCTTGTAACTGGCCTGCGAGGAGTCTAAGGTAGCGGTGACACTAGATA1397080.1538212640248168No Hit
GCAATCCGAACTGGCCTGCGATAGTGACTAGGTAGCGGTGACAAAGGGAA1379570.1518933784827759No Hit
CAGAATCGTACTGGCCTGCGAAGTGAAAGGGGTAGCGGTGACAAACGTGT1261110.13885069879630138No Hit
AACCGCCTCACTGGCCTGCGACACCAGGTAGGTAGCGGTGACAATATTGT1238310.13634037381865813No Hit
TCTCTTCAAACTGGCCTGCGAATTACCAAGGGTAGCGGTGACAAGTAATT1137100.1251969531613216No Hit
ATGGATCCAACTGGCCTGCGAAAGCTACTTGGTAGCGGTGACAAACATCC1011060.11131970052175343No Hit
CTTCACATAACTGGCCTGCGAATCCAACCGGGTAGCGGTGACAGATCAGC956130.10527179916114188No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)