FastQCFastQC Report
Wed 15 May 2024
EGAF00005475341

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005475341
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences89619329
Total Bases5.8 Gbp
Sequences flagged as poor quality0
Sequence length65
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATCGAATGACTGGCCTGCGAAGGGCTGGTGGTAGCGGTGACAACAAGTG3820430.4262953140387829No Hit
TTGTTCCAAACTGGCCTGCGAAGATAGTTCGGTAGCGGTGACACATAACG2459450.2744329853217267No Hit
AACTGTATTACTGGCCTGCGAGACACTTAAGGTAGCGGTGACAACAGTAA2012360.22454530986278642No Hit
AACTGTATTACTGGCCTGCGAACTTGATGAGGTAGCGGTGACATCTCACG1726030.19259572898609853No Hit
TAGCTTGTAACTGGCCTGCGAGGAGTCTAAGGTAGCGGTGACACTAGATA1448450.16162249998546632No Hit
GCAATCCGAACTGGCCTGCGATAGTGACTAGGTAGCGGTGACAAAGGGAA1439720.16064837977084162No Hit
CAGAATCGTACTGGCCTGCGAAGTGAAAGGGGTAGCGGTGACAAACGTGT1318680.14714236479052414No Hit
AACCGCCTCACTGGCCTGCGACACCAGGTAGGTAGCGGTGACAATATTGT1206030.13457253178050463No Hit
TCTCTTCAAACTGGCCTGCGAATTACCAAGGGTAGCGGTGACAAGTAATT1186640.13240893602316528No Hit
ATGGATCCAACTGGCCTGCGAAAGCTACTTGGTAGCGGTGACAAACATCC1057790.1180314572540484No Hit
CTTCACATAACTGGCCTGCGAATCCAACCGGGTAGCGGTGACAGATCAGC992240.11071718691399708No Hit
ATTGGCTAAACTGGCCTGCGATTGGTATGAGGTAGCGGTGACAACTTACG940180.10490817220914475No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)