FastQCFastQC Report
Thu 16 May 2024
EGAF00005475349

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005475349
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences89538327
Total Bases5.8 Gbp
Sequences flagged as poor quality0
Sequence length65
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATCGAATGACTGGCCTGCGAAGGGCTGGTGGTAGCGGTGACAACAAGTG3862790.4314119025252728No Hit
TTGTTCCAAACTGGCCTGCGAAGATAGTTCGGTAGCGGTGACACATAACG2491740.2782875315505951No Hit
AACTGTATTACTGGCCTGCGAGACACTTAAGGTAGCGGTGACAACAGTAA2050960.2290594507087451No Hit
AACTGTATTACTGGCCTGCGAACTTGATGAGGTAGCGGTGACATCTCACG1736250.19391137384105914No Hit
TAGCTTGTAACTGGCCTGCGAGGAGTCTAAGGTAGCGGTGACACTAGATA1471410.16433297888176981No Hit
GCAATCCGAACTGGCCTGCGATAGTGACTAGGTAGCGGTGACAAAGGGAA1457610.16279173945253633No Hit
CAGAATCGTACTGGCCTGCGAAGTGAAAGGGGTAGCGGTGACAAACGTGT1337220.14934610069272347No Hit
AACCGCCTCACTGGCCTGCGACACCAGGTAGGTAGCGGTGACAATATTGT1222000.13647786829879008No Hit
TCTCTTCAAACTGGCCTGCGAATTACCAAGGGTAGCGGTGACAAGTAATT1196040.13357855122756537No Hit
ATGGATCCAACTGGCCTGCGAAAGCTACTTGGTAGCGGTGACAAACATCC1069720.11947062624924855No Hit
CTTCACATAACTGGCCTGCGAATCCAACCGGGTAGCGGTGACAGATCAGC1010600.11286786718719907No Hit
ATTGGCTAAACTGGCCTGCGATTGGTATGAGGTAGCGGTGACAACTTACG948590.10594234131714345No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)