FastQCFastQC Report
Tue 14 May 2024
EGAF00005475361

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005475361
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences176446062
Total Bases10.7 Gbp
Sequences flagged as poor quality0
Sequence length61
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGCAATCAACTGGCCTGCGAACTTCGAGCGGTAGCGGTGACAGTTAGCC3168420.17956875682496104No Hit
AACCGCCTCACTGGCCTGCGAAGAATGGAGGGTAGCGGTGACAACTTACG3138230.17785775235947177No Hit
TACCGAGCAACTGGCCTGCGAACTATCCTCGGTAGCGGTGACAGATGGTC2170280.12299962806764143No Hit
AGCCATCACACTGGCCTGCGAAAGAGTAGAGGTAGCGGTGACAGCTATGG2053850.11640101097864115No Hit
CAACATATTACTGGCCTGCGAACAATATGGGGTAGCGGTGACATCTCGGT1778330.10078604077885286No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)