EGAF00005475459 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005475459
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	34599591
Sequences flagged as poor quality	0
Sequence length	37-51
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTCCGGTCTTCTCCTTGGGGGTCACCCGCACTCGATATCCAGTGAGCTGAA	215994	0.6242674949539143	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCTCGTATG	207848	0.6007238640479884	TruSeq Adapter, Index 1 (97% over 36bp)
GGGGAAAGTTGGTTGGGTGGGAGGGAGCCAGGTTGGGATGGAGGGAGTTTA	90137	0.26051464018750975	No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA	78635	0.2272714726598936	No Hit
GTGGGAGGGAGCCAGGTTGGGATGGAGGGAGTTTACAGGAAGCAGACAGGG	61866	0.17880558183476794	No Hit
GGCGGGGGTGCGTCGGGTCTGCGAGAGCGCCAGCTATCCTGAGGGAAACTT	56922	0.16451639558398248	No Hit
GCCCGCTCTCCCAGTCATCACAGTCTGGTTTCTTGATATCCTGAAGGAAGA	55395	0.16010304861696198	No Hit
GTCATTTTTGTCAGTGGCCAGTTTGTGCAGTTCCAGTAGTGACTGATTCA	48730	0.14083981512960658	No Hit
GGGGTGTGGAAGGGTTACCAGTTGGGGAAGCTCGTCTGTCTTTTTCCTTC	43564	0.1259090027971718	No Hit
GGGAAAGTTGGTTGGGTGGGAGGGAGCCAGGTTGGGATGGAGGGAGTTTA	37716	0.10900706889858901	No Hit
CCGGTCTTCTCCTTGGGGGTCACCCGCACTCGATATCCAGTGAGCTGAACA	37704	0.10897238640768904	No Hit
CCCCTCTTCATGACGCTTGTGGAATGTGTCGTTCACATTGTAAGTGATGT	37265	0.10770358528226533	No Hit
GGGGTGCGTCGGGTCTGCGAGAGCGCCAGCTATCCTGAGGGAAACTTCGGA	36126	0.1044116388543437	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGTATG	23015	63.42479	45
CTCGTAT	24800	43.525776	44
CGATAGA	23340	41.9895	36
GTCCGGT	26120	41.365513	1
AACGGAT	2695	40.303566	45
TCTCGTA	25695	38.830154	43
ACACGTC	25505	38.80438	13
GATCGGA	25300	38.71021	1
ACGTCTG	25480	38.659508	15
ATAGATC	25680	37.836353	38
CACACGT	26390	37.45222	12
TCCGGTC	28140	36.911674	2
ATCTCGT	26660	36.480583	42
TCGGAAG	27220	36.35122	3
GATAGAT	27080	36.224247	37
GCACACG	27670	35.68736	11
AGCTGAA	41850	35.639473	45
ATCGGAA	27750	35.552895	2
CACAGCG	27875	35.377747	31
AGCGATA	28130	35.033604	34