EGAF00005475463 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005475463
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	35969272
Sequences flagged as poor quality	0
Sequence length	37-51
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCTCGTATG	342219	0.9514204235214991	TruSeq Adapter, Index 1 (97% over 36bp)
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA	75241	0.2091813256604137	No Hit
GCCCGCTCTCCCAGTCATCACAGTCTGGTTTCTTGATATCCTGAAGGAAGA	72914	0.20271191476991807	No Hit
GTCCGGTCTTCTCCTTGGGGGTCACCCGCACTCGATATCCAGTGAGCTGAA	63718	0.17714564809651973	No Hit
GGCGGGGGTGCGTCGGGTCTGCGAGAGCGCCAGCTATCCTGAGGGAAACTT	63160	0.1755943239551804	No Hit
GTCGGAGGAAAAGGTTGGGGAACAGCTAAATAGGTTGTTGTTGATTTGGTT	62343	0.17332294075899007	No Hit
GGGAGGGCGATGAGGACTAGGATGATGGCGGGCAGGATAGTTCAGACGGTT	60357	0.16780156128820176	No Hit
GTCATTTTTGTCAGTGGCCAGTTTGTGCAGTTCCAGTAGTGACTGATTCA	59208	0.16460716802942243	No Hit
GCGGGGGCTTTGTATGATTATGGGCGTTGATTAGTAGTAGTTACTGGTTGA	58464	0.16253873584097003	No Hit
GGGCAGGATAGTTCAGACGGTTTCTATTTCCTGAGCGTCTGAGATGTTAGT	50645	0.14080073680668323	No Hit
GCGGTCTGTTAGTAGTATAGTGATGCCAGCAGCTAGGACTGGGAGAGATAG	47368	0.13169018266480345	No Hit
GTCGGGTGTGTTATTATTCTGAATTTTGGGGGAGGTTATATGGGTTTAATA	45982	0.12783689366857354	No Hit
GGCGGGTTTTAGGGGCTCTTTGGTGAAGAGTTTTATGGCGTCAGCGAAGGG	41769	0.11612411838638269	No Hit
GGGGTGCGTCGGGTCTGCGAGAGCGCCAGCTATCCTGAGGGAAACTTCGGA	39596	0.11008285071769036	No Hit
GGGGCAATGAATGAAGCGAACAGATTTTCGTTCATTTTGGTTCTCAGGGTT	37683	0.10476442225464	No Hit
GGGGAAAGTTGGTTGGGTGGGAGGGAGCCAGGTTGGGATGGAGGGAGTTTA	37305	0.10371352525566822	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGTATG	37295	62.623547	45
CTCGTAT	38945	45.09736	44
CGATAGA	37540	42.77698	36
TCTCGTA	39850	40.880894	43
ACACGTC	40410	40.13592	13
ATAGATC	39795	39.851685	38
ATCTCGT	39830	39.8255	42
ACGTCTG	41340	39.152607	15
CACACGT	41520	39.051647	12
GATCGGA	41540	38.876274	1
GATAGAT	41585	38.48878	37
CACAGCG	42445	38.111687	31
GATCTCG	41505	38.078568	41
GTCCGGT	9570	37.693623	1
TCGGAAG	43155	37.685738	3
TAGATCT	42220	37.587173	39
CACGTCT	43235	37.5498	14
AGATCTC	42905	36.916393	40
ATCGGAA	44690	36.321777	2
CAGTCAC	44925	36.07743	27