EGAF00005475507 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005475507
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22590139
Sequences flagged as poor quality	0
Sequence length	100
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	207101	0.916776120766676	No Hit
GCCCCGAGAGAACCTCCCCCGGGCCCGACGGCGCGACCCGCCCGGGGCGC	40955	0.18129591854215682	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	39131	0.17322159903487092	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGT	38394	0.16995911357606078	No Hit
GGCTGCTAGGCGCCGGCCGAGGCGAGGCGCCGCGCGGAACCGCGGCCCCG	32406	0.14345197256201034	No Hit
GGCCCCGAGAGAACCTCCCCCGGGCCCGACGGCGCGACCCGCCCGGGGCG	30363	0.1344082035086194	No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG	29734	0.13162380275747748	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	27434	0.12144236916824637	No Hit
GGGGTGGGGGTGGGGGGGGCGCGCCGGCGCCCGCCGGGCTCCCCGGGGGC	25760	0.1140320561993886	No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	24902	0.11023393879957977	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGTCCGC	78045	37.45837	7
CAGTCCG	77000	36.61797	6
GTCCGCC	81790	35.806427	8
TCCGCCC	82430	35.78647	9
TAGTCCG	2950	35.364273	6
GTTCCGT	4160	33.18773	1
CCGTGGG	81075	31.945091	94
GTCCGTT	2925	31.50122	2
TCGGCCC	38135	31.213696	8
ACAGTCC	77340	29.973724	5
GACAGTC	77170	29.949936	4
GGACAGT	80095	28.699163	3
GAGTCGT	6475	27.942997	9
CCGCTAA	7260	27.779081	2
CGCTAAG	7785	27.528543	3
TTCCGAC	28905	27.378075	8
TCGTACG	4810	27.358929	12-13
GGGACAG	87855	26.171486	2
CCCGTCG	55145	25.738352	44-45
GGGGACA	89635	25.68497	1