FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005475519

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005475519
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25045258
Sequences flagged as poor quality0
Sequence length100
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG2094920.8364537510454075No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGT445640.17793388273341007No Hit
GCCCCGAGAGAACCTCCCCCGGGCCCGACGGCGCGACCCGCCCGGGGCGC354410.14150782555324445No Hit
GGGGTGGGGGTGGGGGGGGGCGCGCCGGCGCCCGCCGGGCTCCCCGGGGG300910.12014649639464683No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG279270.11150613820787951No Hit
GGGGGTGGGGGGGGGCGCGCCGGCGCCCGCCGGGCTCCCCGGGGGCGGCC274100.10944187518451597No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG267410.10677071084673993No Hit
GGCCCCGAGAGAACCTCCCCCGGGCCCGACGGCGCGACCCGCCCGGGGCG256690.10249045947140971No Hit
GGCTGCTAGGCGCCGGCCGAGGCGAGGCGCCGCGCGGAACCGCGGCCCCG255630.1020672256600431No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)