FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005475521

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005475521
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20590186
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG1404590.6821647944316773No Hit
GGCTGCTAGGCGCCGGCCGAGGCGAGGCGCCGCGCGGAACCGCGGCCCCG336980.16366049340205086No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGT329730.16013939844933892No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG252100.1224369707005075No Hit
GGGCTTTGTTTCGAAAAATAACAAAATGAGGTAATAAGTTAATGTATGTA236210.11471970190070162No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)