FastQCFastQC Report
Fri 13 May 2022
EGAF00005478108

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005478108
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences942705578
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAAGTCCAAGTGTAGATCTC54824290.5815632290657773Illumina Single End PCR Primer 1 (96% over 32bp)
CTTGATCTCATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT46223170.49032456239481376No Hit
CTTGATCTCATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA35928960.381125993507169No Hit
CTTGATCTCATGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC14474060.15353743881209964No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)