FastQCFastQC Report
Thu 26 May 2022
EGAF00005478113

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005478113
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences737832447
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGGAGCGTCATCTCGTATG44693040.6057342718081901TruSeq Adapter, Index 2 (97% over 35bp)
ACTCCTGGGTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT39093240.5298389920225344No Hit
ACTCCTGGGTATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA24941010.33803081040159244No Hit
ACTCCTGGGTAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC12781560.17323119973876672No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)