FastQCFastQC Report
Tue 26 Apr 2022
EGAF00005478114

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005478114
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences737832447
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCACGGACGTGTAGATCTC40837600.5534806739124065Illumina Single End PCR Primer 1 (96% over 31bp)
ACTCCTGGGTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT37060770.5022924940572585No Hit
ACTCCTGGGTATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA26415940.35802085022698926No Hit
ACTCCTGGGTAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC12107430.16409457254459833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)