FastQCFastQC Report
Fri 13 May 2022
EGAF00005478121

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005478121
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1005905412
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTGCGACAGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT63750560.6337629685603083No Hit
CCTTGCGACAGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA40993550.4075288740965637No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCGTAGTGATCTCGTATG26976800.26818426144425594TruSeq Adapter, Index 16 (97% over 36bp)
CCTTGCGACAGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC21616830.214899231499512No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)