FastQCFastQC Report
Fri 13 May 2022
EGAF00005478122

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005478122
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1005905412
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTGCGACAGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT57504230.5716663745318431No Hit
CCTTGCGACAGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA44092440.4383358462336218No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCCAAGTCTGTGTAGATCTC24213690.2407153765268737Illumina Single End PCR Primer 1 (96% over 31bp)
CCTTGCGACAGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC18707450.18597623371768876No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)