FastQCFastQC Report
Fri 13 May 2022
EGAF00005478123

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005478123
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences952684600
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGACTGTATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT57662660.6052649533749155No Hit
AGCGACTGTATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA28601740.3002225500443694No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTAAGTGGTATCTCGTATG25889820.27175646588598157TruSeq Adapter, Index 3 (97% over 36bp)
AGCGACTGTATGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC23858670.25043618843004284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)