FastQCFastQC Report
Fri 13 May 2022
EGAF00005478128

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005478128
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences852936423
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAAAACCCCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT57199800.6706220822275754No Hit
CAGAAAACCCCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA47755890.5598997617199893No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTATGTAAGTGTGTAGATCTC21693330.2543370105323782Illumina Single End PCR Primer 1 (96% over 32bp)
CAGAAAACCCCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC12280160.14397509203332498No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)