FastQCFastQC Report
Fri 13 May 2022
EGAF00005478136

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005478136
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences810723812
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTAAACGCTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT60533600.7466611823164261No Hit
CCCTAAACGCTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA49532790.610969966181282No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGTTCAGGGTGTAGATCTC22403900.27634441801741483Illumina Single End PCR Primer 1 (97% over 36bp)
CCCTAAACGCTGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC10683120.13177261900875314No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)