FastQCFastQC Report
Fri 13 May 2022
EGAF00005478140

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005478140
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences805629899
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCAGCGAACGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT44453070.5517802908652972No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCTTGGTATGTGTAGATCTC44150310.5480222376900636Illumina Single End PCR Primer 1 (96% over 31bp)
CATCAGCGAACTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA38922190.48312742672923065No Hit
CATCAGCGAACGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC12993380.1612822465517755No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)