FastQCFastQC Report
Fri 13 May 2022
EGAF00005478142

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005478142
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1007487442
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCACGACGTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT37971400.37689204269009635No Hit
CGCACGACGTATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA27283410.2708064523944706No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCAGAATTGTGTAGATCTC17579000.17448356443136687Illumina Single End PCR Primer 1 (96% over 31bp)
CGCACGACGTAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC14766770.1465702636519811No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)