FastQCFastQC Report
Fri 13 May 2022
EGAF00005478146

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005478146
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1047692330
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATAGTGATACTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT49294020.4705009150921244No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTCCAACGCGTGTAGATCTC42602210.4066290148368272Illumina Single End PCR Primer 1 (96% over 31bp)
ATAGTGATACTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA36829950.35153402335206557No Hit
ATAGTGATACTGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC14852910.14176786041757125No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)