FastQCFastQC Report
Mon 30 May 2022
EGAF00005478147

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005478147
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences967755891
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACAAATTGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT47002290.48568332610645926No Hit
AGAACAAATTGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA31915980.3297937041439306No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTGAAGATCTCGTATG31626410.32680152395993006TruSeq Adapter, Index 16 (97% over 36bp)
AGAACAAATTGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC10795480.11155168467995406No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)