FastQCFastQC Report
Fri 13 May 2022
EGAF00005478148

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005478148
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences967755891
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACAAATTGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT42865480.4429369058730948No Hit
AGAACAAATTGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA32180580.3325278647154213No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTATCCACTGGTGTAGATCTC30764350.31789369908366694Illumina Single End PCR Primer 1 (96% over 32bp)
AGAACAAATTGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC9715370.10039070896236994No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)