FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005478186

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005478186
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106088857
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT2605300.24557715802329738Illumina Single End PCR Primer 1 (100% over 50bp)
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT1087110.10247164789417987No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)