FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005478297

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005478297
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences184407852
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT2881780.15627208758984948No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT2197500.11916520778084871No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT2049630.1111465687480596No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)