FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005479588

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479588
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22460183
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG551600.24559016282280516No Hit
GTGGGG349680.1556888472369081No Hit
GGGGGT337690.15035051139164804No Hit
GGTGGG320130.14253223137140067No Hit
GGGTGG318200.14167293294092928No Hit
GGGGTG309320.13771926969606615No Hit
CGGGGG307520.13691785147075605No Hit
TGGGGG304740.13568010554499935No Hit
GGCGGG304330.1354975602825676No Hit
GGGGCG283800.12635694019055857No Hit
AGGGGG280620.12494110132584406No Hit
GCGGGG272690.12141040881100568No Hit
GGGCGG262830.11702041786569592No Hit
GGAGGG257040.11444252257428178No Hit
GGGGGC251610.11202491092792966No Hit
GTGTGG232340.1034452835936377No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)