FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005479600

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479600
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11149306
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG366200.3284509367668266No Hit
GGGGGT291130.2611193916464397No Hit
GGGTGG258630.23196959523758698No Hit
TGGGGG248440.22283001291739593No Hit
GGTGGG246630.221206593486626No Hit
GTGGGG232730.20873944979176284No Hit
GGGGTG224340.20121431773421594No Hit
AGGGGG198350.17790344977525954No Hit
GGTGGT194140.1741274299942974No Hit
GGCGGG193270.17334711236735273No Hit
GGGGTT184810.16575919613292522No Hit
TTGGGG184550.1655259977616544No Hit
GGGTGT184010.16504166268286116No Hit
GTGTGG182900.16404608502089726No Hit
GGTTGG182840.16399227001214245No Hit
TGGGGT182740.16390257833088445No Hit
GGAGGG180200.16162440962693103No Hit
GTGGGT178350.1599651135236579No Hit
GGGCGG177440.15914891922421No Hit
CGGGGG175610.15750756145718844No Hit
TGGTGG166240.14910345092331306No Hit
TGGGTG164090.14717507977626587No Hit
GAGGGG163320.14648445383057923No Hit
GTTGGG162610.14584764289364738No Hit
GGGTTG161720.1450493869304511No Hit
GCGGGG161480.14483412689543188No Hit
GGGGCG161050.14444845266602244No Hit
TGTGGG156100.14000871444375104No Hit
GGGGGC150110.13463618273639633No Hit
GGGGAG149510.1340980326488483No Hit
GGTGTG148290.13300379413750058No Hit
GGGGGA141710.12710208151072364No Hit
GTTGGT141320.12675228395381738No Hit
GGGAGG141020.12648320891004336No Hit
GGCGGT139250.12489566615177662No Hit
GGTTGT138770.1244651460817382No Hit
GTGTGT138730.12442926940923497No Hit
GTGGTG134250.12041108208887621No Hit
GGTGTT132080.11846477260557742No Hit
AGGGGT131840.1182495125705582No Hit
CGGTGG130540.1170835207142041No Hit
GTCGGG126110.11311017923447432No Hit
GGGCGT125500.11256305997880048No Hit
GTTTGG123620.11087685637114991No Hit
GAGGGT123470.1107423188492629No Hit
CTGGGG123140.11044633630111149No Hit
GTGGTT123060.11037458295610507No Hit
CGGGGT122990.11031179877922448No Hit
GGGTTT122860.11019519959358905No Hit
TTGGGT122840.11017726125733746No Hit
TGGGTT122250.1096480803379152No Hit
GGATGG122140.10954941948853139No Hit
ATGGGG121820.10926240610850578No Hit
TTTGGG121460.10893951605597695No Hit
TGTGGT120850.10839239680030309No Hit
GGTCGG120660.10822198260591288No Hit
TAGGGG119510.10719052827144578No Hit
TTGTGG119420.10710980575831357No Hit
CGTGGG118630.10640124147637531No Hit
AGGTGG117950.10579133804382085No Hit
TGGTGT116900.10484957539061177No Hit
GTAGGG116090.1041230727724219No Hit
TGGTTG116030.10406925776366709No Hit
GGTTTG115680.10375533687926405No Hit
GGGCTG114800.10296605008419359No Hit
GGGGCT112310.10073272722086916No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)