FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005479604

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479604
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17792707
Sequences flagged as poor quality0
Sequence length6
%GC60

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1730710.972707525617097No Hit
GTGGGG800530.44992029599543226No Hit
GGGGGT709160.39856779522081714No Hit
GGGTGG700440.3936669108303756No Hit
GGGGTG694610.3903902874363075No Hit
TGGGGG680340.3823701474991973No Hit
CGGGGG677980.38104376135683005No Hit
GGTGGG627400.3526163837801634No Hit
GGCGGG605190.3401337413132246No Hit
GGGCGG597710.3359297716755522No Hit
GCGGGG565870.3180347993141235No Hit
AGGGGG548350.30818806829112627No Hit
GGGGGC543210.3052992442352926No Hit
GGGGCG522930.2939013158593574No Hit
GGGGAG516290.2901694497638836No Hit
GGAGGG514020.28889364614389484No Hit
GAGGGG484930.27254425085513967No Hit
GGGGGA477100.268143571408218No Hit
GGGAGG428960.24108754221603265No Hit
TTGGGG375800.2112101323311849No Hit
GTTGGG359540.20207155662148543No Hit
GTGGTG358380.20141960411083037No Hit
GGGTTG357550.2009531208488961No Hit
GTGTGG354740.19937382209463686No Hit
GGGGTT350860.19719315335210097No Hit
GTGGGT349790.19659178336382427No Hit
CTGGGG336690.18922921621763344No Hit
TGGGTG328610.18468802976410503No Hit
GTCGGG319840.17975904397234216No Hit
GGTTGG318310.17889914109190916No Hit
GGGTGT316370.17780880672064123No Hit
GGTGGT313770.17634753385193158No Hit
TGTGGG310880.17472327285555816No Hit
TGGTGG308740.17352053287900487No Hit
TGGGGT297480.1671920973014393No Hit
GGTGTG290760.16341526896385133No Hit
ATGGGG289350.16262280944658955No Hit
TCGGGG286430.16098168760942333No Hit
CGGGGT285920.1606950533159457No Hit
GGCGGT282530.1587897783063589No Hit
GGGGTA281980.15848066289182416No Hit
CGGTGG279710.15720485927183536No Hit
TGCGGG276690.15550753463202646No Hit
GGGGTC272450.15312453579997692No Hit
GGGCGT270650.15211288535240872No Hit
TAGGGG268500.15090452509559113No Hit
GTAGGG267370.15026943342572888No Hit
GGCCGG267110.15012330613885788No Hit
GGCTGG266850.14997717885198694No Hit
GTGCGG265730.14934770746238896No Hit
GGCGTG264240.14851028570301303No Hit
GTGGCG264150.14845970318063462No Hit
CGGGTG263030.14783023179103663No Hit
CCGGGG261470.14695346806981086No Hit
AGGTGG256890.14437937970877618No Hit
GGGTAG256390.1440983656955628No Hit
GGGGAT255170.14341269150332212No Hit
GGGGCT254800.14320474113354423No Hit
CAGGGG250650.14087232482387305No Hit
AGGGGT249770.1403777401606175No Hit
GGATGG249450.14019789119216092No Hit
CGCGGG248640.13974264849075524No Hit
GGGCTG248120.1394503939170133No Hit
CGTGGG244430.13737651049949848No Hit
TGAGGG240450.13513963895431988No Hit
GTGGAG240290.1350497144700916No Hit
GGTCGG240220.13501037250824172No Hit
AGCGGG237340.13339173179213257No Hit
GTGGGC236890.13313881918024054No Hit
GGGTCG236490.13291400796966982No Hit
TGGCGG235880.13257117087354947No Hit
GATGGG235220.1322002323761078No Hit
GCGGGT234680.13189673724183734No Hit
GGAGGT232430.13063217418237708No Hit
TGGGAG231400.1300532853151575No Hit
GTGGGA230960.1298059929835297No Hit
GCGTGG230520.12955870065190192No Hit
GGTAGG225480.12672607939871094No Hit
AGGGTG225190.12656309127104717No Hit
GCCGGG224230.12602354436567748No Hit
GGGCAG222370.12497817223652366No Hit
GCGGTG221460.12446672673247527No Hit
GGTGAG221290.12437118196798272No Hit
TGGGCG217370.12216803210438973No Hit
AGTGGG217150.12204438593857583No Hit
GGTGGC216930.12192073977276194No Hit
GGCGGC216690.12178585304641952No Hit
TGGGGC216690.12178585304641952No Hit
GGCAGG216360.12160038379769869No Hit
GGAGTG215600.12117324249761434No Hit
TGGGGA214370.12048194802510939No Hit
GAGGGT214120.12034144101850269No Hit
GCTGGG213750.12013349064872478No Hit
AAGGGG213450.11996488224079674No Hit
GAGGTG211450.1188408261879432No Hit
GGGAGT210600.11836310236548041No Hit
CGAGGG210290.1181888736772881No Hit
GGGTGC209940.11799216386803875No Hit
CGGGGC209860.11794720162592459No Hit
GCAGGG208050.11692993089809213No Hit
GGCGCG207560.11665453716514301No Hit
GGGATG206900.11628359866770131No Hit
GGCGGA206170.11587331820840976No Hit
GGGCCG203050.11411979076595821No Hit
CGGGCG201520.11325988788552523No Hit
CGGCGG201450.11322054592367535No Hit
GTGAGG201330.11315310256050413No Hit
GTTTGG201280.11312500115918281No Hit
GGGTGA199660.11221451575637142No Hit
GGTGGA198310.11145577792069526No Hit
ACGGGG195120.10966290851639382No Hit
GGGTTT194350.10923014693604519No Hit
CGGGAG192860.1083927251766693No Hit
GGCGAG191720.10775201322654275No Hit
GGGGCA191340.1075384425765006No Hit
GACGGG190650.1071506432382661No Hit
CGGGGA189930.10674598305923882No Hit
GGACGG189730.10663357745395345No Hit
GCGCGG189460.10648182988681823No Hit
GAGTGG189250.1063638040012686No Hit
GTGTTG188070.10570061093008501No Hit
TGGAGG187620.10544769831819295No Hit
AGGGGA187530.10539711579581454No Hit
TTTGGG187480.10536901439449321No Hit
GTGGTT186980.10508800038127981No Hit
GGGGAA186930.10505989897995847No Hit
AGAGGG184760.10384029816261237No Hit
GGGAAG184670.10378971564023395No Hit
GAAGGG184180.10351432190728482No Hit
GGGGCC184110.10347497994543495No Hit
GGAAGG183380.1030646994861434No Hit
AGGGAG182990.10284550855583696No Hit
GGGCGC182620.10263755818605905No Hit
AGGGGC182480.10255887426235928No Hit
AGGCGG179340.1007941062593792No Hit
GTTGTG179110.10066483981330103No Hit
GGTGCG179060.10063673841197969No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)