FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005479620

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479620
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7313364
Sequences flagged as poor quality0
Sequence length6
%GC60

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG535680.7324673023248945No Hit
GGGGGT299550.40959263069635266No Hit
GGGTGG248170.3393376837253007No Hit
GTGGGG227380.3109102733024091No Hit
CGGGGG218140.2982758686700129No Hit
TGGGGG215910.2952266562966099No Hit
GGTGGG211690.2894563979038921No Hit
GGGGTG209550.2865302479132722No Hit
AGGGGG205770.2813616278363828No Hit
GCGGGG202150.27641178532888555No Hit
GGGGCG198830.2718721507639986No Hit
GGGCGG197620.27021764539547055No Hit
GGCGGG193900.2651310669071032No Hit
GGGGGC183690.25117032326026706No Hit
GAGGGG180630.24698620224564236No Hit
GGGGAG179430.24534537047520127No Hit
GGGAGG176510.24135267983379471No Hit
GGAGGG155190.21220056871229165No Hit
GGGGTT145280.19865003300806577No Hit
GGGTGT137120.18749237696906648No Hit
GGTGGT123920.1694432274942147No Hit
CGGGGT122290.16721443100603225No Hit
GGGTTG120450.1646984889580226No Hit
GTGGGT117250.16032293757017974No Hit
GGGGCT116010.15862741140739062No Hit
GGGGGA115370.15775230112982205No Hit
GGCGGT115330.15769760673747402No Hit
TTGGGG114990.15723270440251574No Hit
TGGGGT114820.15700025323503655No Hit
GTGTGG112120.15330838175154415No Hit
GTTGGG111000.15177693876579917No Hit
CGGTGG106400.14548708364577506No Hit
GCGGGT106070.14503585490890375No Hit
GGGTCG105820.14469401495672854No Hit
GTGGTG105710.14454360537777142No Hit
GGTTGG105200.14384625187533398No Hit
GGGCGT104960.14351808552124576No Hit
AGGGGT104570.1429848151958524No Hit
GGGCTG102380.13999029721479744No Hit
GGGCCG102130.13964845726262223No Hit
TCGGGG101570.13888273576974974No Hit
TGGTGG100950.13803497268835518No Hit
GGCTGG99990.13672230727200232No Hit
GCCGGG99980.1367086336739153No Hit
GGGGAT96780.13233308228607246No Hit
GGTCGG96660.13216899910902835No Hit
GGAGGT96580.13205961032433228No Hit
GTCGGG96510.13196389513772322No Hit
CTGGGG96200.13154001359702594No Hit
GAGGGT95670.13081531289841447No Hit
GGGGTC95190.13015898019023803No Hit
CCGGGG95110.13004959140554198No Hit
GTGGCG95010.12991285542467187No Hit
GTAGGG94810.1296393834629317No Hit
GGGTAG94720.1295163210801486No Hit
TAGGGG93240.12749262856327132No Hit
TGGCGG91150.12463484656308643No Hit
GTGGGC90970.12438872179752027No Hit
GGGTGC90880.12426565941473719No Hit
GTGCGG90400.12360932670656076No Hit
TGTGGG90360.12355463231421271No Hit
AGGGTG90160.12328116035247255No Hit
CGCGGG89510.12239237647681696No Hit
TGCGGG89080.12180441175907558No Hit
CGTGGG88680.12125746783559523No Hit
CGGGGC87980.1203003159695046No Hit
GCGTGG87840.12010888559628648No Hit
AGTGGG87050.11902867134741277No Hit
CGGGTG86810.11870050499332456No Hit
GCTGGG86790.11867315779715054No Hit
TGGGTG86580.11838601223732334No Hit
GGGAGT86130.11777070032340795No Hit
TGGGCG86000.11759294354827682No Hit
CGGGCG85870.1174151867731457No Hit
GTGAGG85850.11738783957697169No Hit
CGGCGG85590.11703232602670946No Hit
GTGGAG85550.11697763163436142No Hit
ATGGGG85440.11682722205540433No Hit
GGTAGG83930.11476250874426598No Hit
GGTGAG83700.11444801598826478No Hit
GCGGTG83670.11440699519400374No Hit
GCAGGG83440.11409250243800255No Hit
GGTGGC83210.11377800968200133No Hit
GGATGG83020.11351821131834816No Hit
CAGGGG82770.11317637136617294No Hit
AGGTGG82590.11293024660060677No Hit
GGGGCC81760.11179533795938504No Hit
GCGGGC81730.111754317165124No Hit
GGTGTG81650.11164492838042794No Hit
GGCGCG81590.11156288679190589No Hit
GGCAGG81180.11100226927033852No Hit
ACGGGG80920.11064675572007629No Hit
GGGCAG80810.11049634614111918No Hit
GAGTGG80250.10973062464824669No Hit
AAGGGG79210.10830857044719776No Hit
GGCCGG79120.10818550806441468No Hit
TGGAGG78210.10694121063849686No Hit
AGCGGG78040.10670875947101771No Hit
TGGGGC77290.10568323961449204No Hit
CGAGGG76650.10480812933692348No Hit
GGGAGC76350.10439792139431321No Hit
GGGGAC76220.1042201646191821No Hit
GGCGTG76190.10417914382492106No Hit
GAAGGG75610.10338607513587453No Hit
GGCGGC75410.10311260317413437No Hit
GACGGG74820.10230586088700083No Hit
GGGATG74130.10136238261899723No Hit
GGGCGC74000.10118462584386612No Hit
TGGGAG73930.10108891065725704No Hit
GATGGG73840.10096584827447397No Hit
GGGTTT73460.10044625154716762No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)