FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005479629

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479629
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52224846
Sequences flagged as poor quality0
Sequence length25-101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA2314580.44319517955112786No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC965640.18490049736096878No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA698300.13371030332956846No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)