FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005479638

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479638
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5770292
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG140860.24411242966560445No Hit
GGGGTG87370.1514134813281546No Hit
TGGGGG84200.14591982520122032No Hit
GAGGGG81170.14066879111143768No Hit
GGTGGG80670.139802283835896No Hit
GGGGGT80490.139490341216701No Hit
GGGAGG79870.13841587219502932No Hit
GGGGCG78180.1354870776036984No Hit
GGGTGG75440.13073861773372994No Hit
GTGGGG74920.1298374501671666No Hit
CGGGGG74870.1297507994396124No Hit
AGGGGG72690.12597282771825064No Hit
GGGGGC70890.12285340152630057No Hit
GGCGGG69690.12077378406500053No Hit
GCGGGG68010.11786231961918045No Hit
GGGGGA63670.1103410364674786No Hit
GGGGAG63490.11002909384828358No Hit
GGGCGG61820.10713495954797435No Hit
GGAGGG61110.10590451921670516No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)