FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005479640

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479640
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4658444
Sequences flagged as poor quality0
Sequence length6
%GC58

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG255780.5490674568589855No Hit
GGGGGT145940.3132805717960761No Hit
CGGGGG144340.30984594856136516No Hit
GCAATT136250.2924796348308577No Hit
GTGGGG131560.2824118954741111No Hit
GGGGTG131200.2816391052463011No Hit
TGGGGG131140.28151030687499945No Hit
GCGGGG121630.26109576502368603No Hit
GGTGGG119900.2573820786511548No Hit
GGGTGG119720.2569956835372498No Hit
GGCGGG115910.24881698695959423No Hit
AGGGGG105520.22651340232918973No Hit
GGGGCG104150.22357250618446847No Hit
GAGGGG103390.22194106014798076No Hit
GGGGGC102890.22086774038713358No Hit
GGGCGG98970.21245291346209164No Hit
GGAGGG95820.20569099896875437No Hit
GGGGAG93980.20174118224883675No Hit
GGGGGA91820.19710444088197693No Hit
GGGAGG90130.19347662009031344No Hit
TGGGGT71550.15359205777723206No Hit
GGGGTT69430.14904118199124No Hit
CGGGGT68910.14792492943995894No Hit
GTGGGT68490.14702334084084728No Hit
TTGGGG67730.14539189480435957No Hit
GGTGGT66240.14219340191703497No Hit
GGGTTG66020.1417211412222622No Hit
GTGGTG65120.13978916565273727No Hit
GGGTGT65070.13968183367665254No Hit
TGAGGG64100.137599593340609No Hit
CGTGGG63440.13618281125629073No Hit
GGTGTG63280.13583934893281963No Hit
TGTGGG62110.13332778069243723No Hit
GGTTGG62030.13315604953070165No Hit
TGCGGG61300.13158900267986479No Hit
TGGTGG60980.1309020780329226No Hit
GTTGGG60860.13064448129031925No Hit
GAGGTG60450.12976435908642456No Hit
GGCGGT60190.12920623281078403No Hit
GTGTGG60180.1291847664155671No Hit
GCAGGG59940.12866957293036044No Hit
GACGGG59520.1277679843312488No Hit
TGGAGG59350.12740305561256077No Hit
GTCGGG58870.12637266864214747No Hit
TGGGTG58620.12583600876172388No Hit
CGGGCG58010.12452655865349031No Hit
CGGGTG57720.12390403319219893No Hit
AGGGGT57280.12295951180265342No Hit
CGGTGG56570.12143539774225041No Hit
GAGGGT56420.12111340181399627No Hit
TCGGGG56270.12079140588574211No Hit
CTGGGG55950.12010448123879992No Hit
GTGGCG55910.12001861565793213No Hit
GGTGGA55360.11883796392100023No Hit
CAGGGG55360.11883796392100023No Hit
GGGCGT54850.11774317776493609No Hit
TGGGCG54480.11694892114190918No Hit
TAGGGG53550.11495254638673343No Hit
CGGAGG52850.11344989872154737No Hit
GGGATG52660.11304203721242544No Hit
GCCGGG52450.11259124291286964No Hit
GTGGAG52110.11186138547549353No Hit
GGCAGG51810.11121739361898521No Hit
GAGTGG51400.11033727141509053No Hit
TGGGGA51380.11029433862465665No Hit
GGATGG51370.11027287222943971No Hit
GTAGGG51320.11016554025335498No Hit
ATGGGG51180.10986501072031778No Hit
GGCTGG50790.10902782130685695No Hit
GGGGCT50550.10851262782165033No Hit
GGCGTG50550.10851262782165033No Hit
AGGTGG50530.10846969503121642No Hit
CGGGGA50420.10823356468383007No Hit
GGGCTG50360.1081047663125284No Hit
CCGGGG50090.1075251736416709No Hit
GTGAGG49340.10591519400040014No Hit
TGGGGC49260.10574346283866458No Hit
GGGTAG48980.10514240377259017No Hit
ACGGGG48820.10479894144911905No Hit
GCGGGT48780.10471307586825129No Hit
GCGTGG48720.10458427749694962No Hit
CGGCGG48670.10447694552086491No Hit
GGCCGG48550.10421934877826158No Hit
GGGGCA48480.10406908401174297No Hit
GGAGGT48120.103296293783933No Hit
GGGGTC47970.10297429785567885No Hit
CGCGGG47930.10288843227481106No Hit
GCGGTG47930.10288843227481106No Hit
CGGGAG47740.10248057076568913No Hit
GGGGTA47640.10226590681351971No Hit
TGGCGG46960.10080619193876754No Hit
GTGGGA46770.1003983304296456No Hit
GGGTCG46750.10035539763921172No Hit
CGGGGC46650.10014073368704228No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)