FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005479646

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479646
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15401401
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG401280.26054772549588184No Hit
GTGGGG267810.17388677822231885No Hit
GGGGTG259830.1687054314084803No Hit
GGTGGG255400.16582906970606115No Hit
GGGTGG246730.16019971170155237No Hit
AGGGGG245330.1592907034885982No Hit
TGGGGG229130.14877217988155753No Hit
CGGGGG208150.13515004251885918No Hit
GGGGGT202090.13121533553992912No Hit
GGGGAG197640.12832598800589637No Hit
GTTGGG194100.12602749581028375No Hit
GGGGCG191710.12447568893245492No Hit
GGCGGG191230.12416402897372777No Hit
GGGGGA188420.1223395196320127No Hit
GGAGGG184310.11967093123541163No Hit
GTGTGG184220.1196124949931503No Hit
GCGGGG183890.11939822877152538No Hit
GAGGGG182330.11838533390566221No Hit
GGGGGC179580.11659978205878802No Hit
GGGCGG179340.11644395207942447No Hit
GTGGTG176560.11463892148512983No Hit
GGTGGT167840.10897709890158692No Hit
ATGGGG165830.10767202282441707No Hit
GGGTTG165170.10724349038116728No Hit
GTGGGT161100.10460087364779348No Hit
GGGTAG159420.10351006379224852No Hit
GGGTGT158510.10291920845382832No Hit
TTGGGG156010.10129597950212452No Hit
GGTTGG155660.10106872744888597No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)