FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005479648

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479648
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2175281
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG48850.22456868790744736No Hit
TGTTGT38220.17570143811305297No Hit
GGGGTG35880.16494420720817218No Hit
CGGTGG33990.15625567455423No Hit
GTGGGG31560.14508470399916149No Hit
CGGGGG31120.14306197682046595No Hit
AGGGGG29470.13547674990035768No Hit
GGGTCG29100.13377582022736373No Hit
TGGGGG28540.13120144018175123No Hit
CTGGGG27130.12471951899547691No Hit
GGGGGC26830.12334038682818449No Hit
GCGGGG26590.12223708109435057No Hit
ATGGCT26460.12163945715519052No Hit
GGGGTT25990.11947881675976575No Hit
GTTGGT25600.11768594494228561No Hit
GCTGGG25550.11745608958107022No Hit
TGTATG25500.11722623421985483No Hit
TTTTGG25490.11718026314761172No Hit
GGGTGG25330.11644472599172245No Hit
GGTGGG25150.11561724669134699No Hit
CTTGGT24920.11455991202975616No Hit
CGGCGT24670.11341063522367915No Hit
GGGTGT24540.11281301128451911No Hit
GTAGGG24300.11170970555068518No Hit
TGTTTG23990.11028460231114968No Hit
GTGGTT23860.10968697837198964No Hit
CGTGTT23830.10954906515526039No Hit
GGGGGT23790.10936518086628808No Hit
TGGGCG23780.109319209794045No Hit
GGTGTG23680.1088594990716142No Hit
GGTTCG23530.108169932987968No Hit
GTACGT23440.10775619333778026No Hit
CGCGGG23000.10573346615908473No Hit
TTTGCT22860.1050898711476816No Hit
TGTGGC22580.10380268112487535No Hit
GGGTCA22260.10233160681309679No Hit
GGGGCT22250.10228563574085371No Hit
TGGGAC21960.10095247464580437No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)