FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005479666

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479666
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4554201
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG99120.2176452027479683No Hit
GGGGGT82000.18005353738229823No Hit
GTGGGG73590.16158707092638203No Hit
GGGTGG71230.15640504228952565No Hit
GGTGGG66630.14630447799734794No Hit
GGGGTG65110.14296690023123704No Hit
TGGGGG63830.1401563084281963No Hit
GTGGGT63020.13837773080283458No Hit
GTTGGG61840.13578671648440638No Hit
GGGGTT60320.1324491387182955No Hit
GGTTGG58820.1291554764491071No Hit
TTGGGG58470.12838695525296315No Hit
GTTTGG57360.12594964517376375No Hit
TGGTGG57180.12555440570146112No Hit
GGGTGT56960.1250713352353135No Hit
CGGGGG56440.1239295323153282No Hit
AGGGGG55780.12248032091688531No Hit
TGTGGG55770.12245836316842405No Hit
GGTGGT55090.12096523627305865No Hit
TGGGGT54910.12056999680075606No Hit
GTTGGT54110.11881337692385557No Hit
GGGTTT53780.11808877122463414No Hit
GGGTTG53280.11699088380157134No Hit
GTGTGG53010.11639802459311743No Hit
GTGGTG51910.11398267226237929No Hit
GCGGGG50740.11141361569241234No Hit
GGAGGG48530.1065609532824748No Hit
GGTTTT47560.10443105168173297No Hit
GGGTAG47350.1039699389640466No Hit
CGGGGT46990.10317946001944138No Hit
TTTTTT46120.10126913590331212No Hit
GGTGTG46040.10109347391562208No Hit
TTGGTT45960.10091781192793203No Hit
GAGGGG45930.10085193868254827No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)