FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005479668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13407411
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG480380.35829437913106416No Hit
GGGGGT305730.2280306018813028No Hit
GGGGTG273970.20434221043868944No Hit
GTGGGG271770.20270132690047318No Hit
GGGTGG263050.1961974612399068No Hit
TGGGGG257120.19177453424826016No Hit
GGTGGG254050.1894847558562947No Hit
GGGGGC214530.16000852066070026No Hit
GGGCGG201800.15051377182365783No Hit
AGGGGG201210.15007371669295436No Hit
GCGGGG200170.14929802629307032No Hit
GTGGGT198000.14767951843946606No Hit
GGGTGT194090.14476322087836346No Hit
GAGGGG193210.14410686746307694No Hit
CGGGGG190730.14225714420181496No Hit
GGGGTT188410.14052675792515051No Hit
GGCGGG186350.13899029424845705No Hit
GGGGAG183210.13664830592573018No Hit
GGAGGG181930.1356936100489498No Hit
GGGGCG181760.1355668145028149No Hit
GGGGGA181310.13523117923363429No Hit
GTGTGG178180.13289664947244476No Hit
GGTGGT177630.13248642858789067No Hit
GGGTTG171260.1277353248886008No Hit
GGTTGG170590.12723560126559855No Hit
TTGGGG168340.12555742491969554No Hit
GGGAGG165600.12351377905846252No Hit
TGGTGG165560.12348394481231312No Hit
TGGGTG163660.12206681812021725No Hit
GTTGGG159360.11885963665915814No Hit
TGTGGG157460.11744250996706225No Hit
TGGGGT156130.11645052128259513No Hit
GGTGTG155250.1157941678673086No Hit
GTGGTG150680.11238560524474113No Hit
GGGCGT143810.10726157346858392No Hit
AGGGGT141960.10588173958417475No Hit
TGGCGG140650.10490466802278231No Hit
GGGGCT138550.1033383700999395No Hit
ATGGGG138310.10315936462304318No Hit
GAGGGT136680.10194361909245567No Hit
GGAGGT134540.10034748692346344No Hit
AGGTGG134200.10009389583119366No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)