FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005479670

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479670
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18199347
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG560240.3078352206812695No Hit
GTGGGG402000.220887046112149No Hit
TGGGGG385250.2116834191908094No Hit
GGGTGG367650.20201274254510343No Hit
AGGGGG342840.18838038529624168No Hit
GGTGGG306530.16842912001183338No Hit
GCGGGG285250.1567363927947525No Hit
CGGGGG280680.15422531368845266No Hit
GAGGGG270150.14843939180894786No Hit
TTGGGG265820.1460601855659986No Hit
GGGGGA254960.1400929384993868No Hit
GGGGAG249180.13691700037369472No Hit
TGTGGG239390.13153768648952074No Hit
GTTGGG239220.13144427654464746No Hit
GGGGCG239200.13143328713936822No Hit
GGGGTG239030.13133987719449494No Hit
GGGGGT236820.1301255479111421No Hit
GGGCGG234750.12898814446474371No Hit
GGGGGC232140.12755402707580663No Hit
TGGTGG230280.12653201238483996No Hit
GTGGTG226980.1247187605137701No Hit
TGGGTG226360.12437808895011454No Hit
GGCGGG217520.11952077181670308No Hit
ATGGGG217460.11948780360086546No Hit
GGAGGG206950.11371287112663987No Hit
AGGGTG201980.11098200391475584No Hit
AGTGGG200750.11030615549008434No Hit
GTAGGG194990.10714120676967147No Hit
TAGGGG193270.10619611791565928No Hit
GTGTGG191960.10547631186987093No Hit
CTGGGG191310.10511915619829658No Hit
GGTTGG190680.10477298993200142No Hit
TCGGGG187190.10285533871077902No Hit
GGGTTG182050.10003106155402168No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)