FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005479676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5652585
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG289420.5120135300928691No Hit
GGGGGT133310.23583900109418965No Hit
GGTGGG123950.21928020542813595No Hit
AGGGGG122680.21703344575977188No Hit
TGGGGG122450.21662655227652483No Hit
GGGTGG122440.21660886125551407No Hit
GCCGTC120950.21397289912491366No Hit
GTGGGG119940.2121861060028288No Hit
GAGGGG118870.2102931667546795No Hit
CGGGGG118100.20893095813685242No Hit
GGGGTG117560.2079756430022724No Hit
GGGCGG116530.20615346783816607No Hit
GGGGCG112980.199873155379353No Hit
GGGGGA112280.1986347839086011No Hit
GCGGGG110480.1954504001266677No Hit
GGGGGC107060.18940007094099426No Hit
GGCGGG105920.18738329454576977No Hit
GGGGAG102770.1818106229273863No Hit
GGGAGG102110.1806430155406774No Hit
GGAGGG98590.17441577614489653No Hit
GTGTGG73640.13027667872309748No Hit
GGGGTT67510.1194320828435132No Hit
TGGTGG67210.11890135221319095No Hit
GGTTGG66920.11838831260387946No Hit
GTGGTG66040.11683150275493424No Hit
GGGTTG65330.11557544026317162No Hit
GGTGTG64710.11447859696050568No Hit
GGGTAG63970.11316946140571085No Hit
ATGGGG63530.11239105648123823No Hit
TTGGGG63520.1123733654602275No Hit
GGTGGT63330.1120372360610234No Hit
GGGTGT63010.11147112338867969No Hit
GGGAGT62320.11025044293893856No Hit
AGGTGG62290.11019736987590634No Hit
GTGGCG61500.10879977921605778No Hit
GGGGCT61400.10862286900595038No Hit
GTTGGG61230.10832212164876777No Hit
TGTGGG61180.10823366654371407No Hit
GGGGTA60890.10772062693440258No Hit
AAGGGG60560.10713682324104813No Hit
GGGGCA60440.10692453098891924No Hit
TGGGGT60420.10688914894689774No Hit
GGTAGG59930.10602228891737142No Hit
TCGGGG59670.10556232237109217No Hit
GCTGGG59590.10542079420300624No Hit
TAGGGG59190.1047131533625766No Hit
TGGGTG59160.10466008029954438No Hit
GAGGTG58790.10400551252214695No Hit
CGTGGG58610.10368707414395362No Hit
GGGGAT58450.10340401780778175No Hit
AGGCGG58270.1030855794295884No Hit
TGGCGG58240.10303250636655618No Hit
CGGGGT58090.10276714105139508No Hit
ACGGGG58080.10274945003038434No Hit
CGGTGG57400.10154646060165393No Hit
GGGATG57290.10135185937053579No Hit
GTGGGT57200.1011926401814391No Hit
AGGGGT56650.10021963402584834No Hit
GGGCGT56570.10007810585776242No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)