FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005479682

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005479682
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11928287
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG281950.23637090556255058No Hit
TGGGGG217670.18248219547366692No Hit
GGGGGT216230.18127498105972803No Hit
GGGTGG208730.17498740598712959No Hit
GGTGGG185000.15509351845742814No Hit
GGGGTG179750.15069221590660922No Hit
GTGGGG176340.14783346510693446No Hit
GGTGGT164990.1383182681637355No Hit
GGGTTG160200.13430260355070264No Hit
GGGGTT155480.13034562297168067No Hit
TTGGGG154550.12956596366267847No Hit
AGGGGG154020.12912164169088153No Hit
GTTGGG151390.126916798698757No Hit
GGTTGG150430.1261119890894644No Hit
CGGGGG149560.12538263038104297No Hit
TGGGGT149080.12498022557639668No Hit
GGTGTG147480.12363887622757568No Hit
GGGTGT145340.12184482147352758No Hit
TGGTGG138760.11632852227650121No Hit
GTGGGT137340.11513807472942258No Hit
GTGTGG137320.11512130786256233No Hit
TGTGGG136280.11424943078582868No Hit
GTGGTG136170.11415721301809723No Hit
GGTTGT135510.11360390641170857No Hit
GGAGGG130030.10900978489199664No Hit
GGGCGG129440.1085151623196189No Hit
GGGGGA129280.10838102738473682No Hit
TGGGTG128620.10782772077834815No Hit
GCGGGG128130.10741693254027172No Hit
AGGGGT126820.10631870276092452No Hit
GGCGGG125680.10536299134988956No Hit
GGGGAG125420.10514502208070614No Hit
GGTTTG122860.10299886312259254No Hit
TTGTGG121650.10198446767754667No Hit
GGTGTT121400.10177488184179338No Hit
TGTGGT121340.10172458124121259No Hit
GTTTGG120890.10134732673685669No Hit
GTGTTG120510.10102875626651169No Hit
GAGGGG120360.10090300476505971No Hit
GGTTTT120220.10078563669703788No Hit
GGGGCG120050.10064311832872566No Hit
GGGTTT120050.10064311832872566No Hit
TGGTGT119750.10039161532582172No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)